TY  - GEN
AB  - The files in this collection consist of the improved genomic sequences, gene annotations, and evidence tracks that were used in the analyses described in the manuscript “Drosophilia Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution” (doi: 10.1534/g3.114.015966). The improved genomic sequences and gene annotations were produced by students participating in the Genomics Education Partnership (GEP; http://gep.wustl.edu) during 2007–2012. This study seeks to understand the evolution of the Muller F element through the comparative analysis of Drosophila melanogaster, Drosophila erecta, Drosophila mojavensis, and Drosophila grimshawi. As part of this analysis, we have improved the genomic scaffolds from the D. mojavensis and D. grimshawi assemblies, and produced manual gene annotations for D. erecta, D. mojavensis, and D. grimshawi. The digital assets include the improved sequences and annotations in GenBank ASN.1 format, and the files required to create the UCSC Genome Browser instances for D. melanogaster, D. erecta, D. mojavensis, and D. grimshawi. The Genome Browser instances include the improved genomic sequences, gene annotations, and the results of the bioinformatics analyses described in the manuscript.
AD  - Washington University in St. Louis
AU  - Leung, Wilson
DA  - 2016-06-03
DO  - 10.7936/K7J67F60
DO  - DOI
ID  - 1
KW  - Biological sciences
KW  - Drosophila
KW  - Heterochromatin
KW  - Muller F element evolution
KW  - Transposons
KW  - Codon bias
L1  - https://data.library.wustl.edu/record/1/files/DASI_Faculty_WL.doc
L1  - https://data.library.wustl.edu/record/1/files/DereWGS.dump.xz
L1  - https://data.library.wustl.edu/record/1/files/DgriImproved.dump.xz
L1  - https://data.library.wustl.edu/record/1/files/Digital_Assets_Readme_WL.docx
L1  - https://data.library.wustl.edu/record/1/files/DmojImproved.dump.xz
L1  - https://data.library.wustl.edu/record/1/files/Elgin_ReadMe.pdf
L1  - https://data.library.wustl.edu/record/1/files/dm3.dump.xz
L1  - https://data.library.wustl.edu/record/1/files/four_genomes_improved_annotations.asn1.gz
L1  - https://data.library.wustl.edu/record/1/files/four_genomes_paper_author_list.xlsx
L1  - https://data.library.wustl.edu/record/1/files/gbdb_DereWGS.tgz
L1  - https://data.library.wustl.edu/record/1/files/gbdb_DgriImproved.tgz
L1  - https://data.library.wustl.edu/record/1/files/gbdb_DmojImproved.tgz
L1  - https://data.library.wustl.edu/record/1/files/gbdb_dm3.tgz
L2  - https://data.library.wustl.edu/record/1/files/DASI_Faculty_WL.doc
L2  - https://data.library.wustl.edu/record/1/files/DereWGS.dump.xz
L2  - https://data.library.wustl.edu/record/1/files/DgriImproved.dump.xz
L2  - https://data.library.wustl.edu/record/1/files/Digital_Assets_Readme_WL.docx
L2  - https://data.library.wustl.edu/record/1/files/DmojImproved.dump.xz
L2  - https://data.library.wustl.edu/record/1/files/Elgin_ReadMe.pdf
L2  - https://data.library.wustl.edu/record/1/files/dm3.dump.xz
L2  - https://data.library.wustl.edu/record/1/files/four_genomes_improved_annotations.asn1.gz
L2  - https://data.library.wustl.edu/record/1/files/four_genomes_paper_author_list.xlsx
L2  - https://data.library.wustl.edu/record/1/files/gbdb_DereWGS.tgz
L2  - https://data.library.wustl.edu/record/1/files/gbdb_DgriImproved.tgz
L2  - https://data.library.wustl.edu/record/1/files/gbdb_DmojImproved.tgz
L2  - https://data.library.wustl.edu/record/1/files/gbdb_dm3.tgz
L4  - https://data.library.wustl.edu/record/1/files/DASI_Faculty_WL.doc
L4  - https://data.library.wustl.edu/record/1/files/DereWGS.dump.xz
L4  - https://data.library.wustl.edu/record/1/files/DgriImproved.dump.xz
L4  - https://data.library.wustl.edu/record/1/files/Digital_Assets_Readme_WL.docx
L4  - https://data.library.wustl.edu/record/1/files/DmojImproved.dump.xz
L4  - https://data.library.wustl.edu/record/1/files/Elgin_ReadMe.pdf
L4  - https://data.library.wustl.edu/record/1/files/dm3.dump.xz
L4  - https://data.library.wustl.edu/record/1/files/four_genomes_improved_annotations.asn1.gz
L4  - https://data.library.wustl.edu/record/1/files/four_genomes_paper_author_list.xlsx
L4  - https://data.library.wustl.edu/record/1/files/gbdb_DereWGS.tgz
L4  - https://data.library.wustl.edu/record/1/files/gbdb_DgriImproved.tgz
L4  - https://data.library.wustl.edu/record/1/files/gbdb_DmojImproved.tgz
L4  - https://data.library.wustl.edu/record/1/files/gbdb_dm3.tgz
LA  - eng
LK  - https://data.library.wustl.edu/record/1/files/DASI_Faculty_WL.doc
LK  - https://data.library.wustl.edu/record/1/files/DereWGS.dump.xz
LK  - https://data.library.wustl.edu/record/1/files/DgriImproved.dump.xz
LK  - https://data.library.wustl.edu/record/1/files/Digital_Assets_Readme_WL.docx
LK  - https://data.library.wustl.edu/record/1/files/DmojImproved.dump.xz
LK  - https://data.library.wustl.edu/record/1/files/Elgin_ReadMe.pdf
LK  - https://data.library.wustl.edu/record/1/files/dm3.dump.xz
LK  - https://data.library.wustl.edu/record/1/files/four_genomes_improved_annotations.asn1.gz
LK  - https://data.library.wustl.edu/record/1/files/four_genomes_paper_author_list.xlsx
LK  - https://data.library.wustl.edu/record/1/files/gbdb_DereWGS.tgz
LK  - https://data.library.wustl.edu/record/1/files/gbdb_DgriImproved.tgz
LK  - https://data.library.wustl.edu/record/1/files/gbdb_DmojImproved.tgz
LK  - https://data.library.wustl.edu/record/1/files/gbdb_dm3.tgz
N2  - The files in this collection consist of the improved genomic sequences, gene annotations, and evidence tracks that were used in the analyses described in the manuscript “Drosophilia Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution” (doi: 10.1534/g3.114.015966). The improved genomic sequences and gene annotations were produced by students participating in the Genomics Education Partnership (GEP; http://gep.wustl.edu) during 2007–2012. This study seeks to understand the evolution of the Muller F element through the comparative analysis of Drosophila melanogaster, Drosophila erecta, Drosophila mojavensis, and Drosophila grimshawi. As part of this analysis, we have improved the genomic scaffolds from the D. mojavensis and D. grimshawi assemblies, and produced manual gene annotations for D. erecta, D. mojavensis, and D. grimshawi. The digital assets include the improved sequences and annotations in GenBank ASN.1 format, and the files required to create the UCSC Genome Browser instances for D. melanogaster, D. erecta, D. mojavensis, and D. grimshawi. The Genome Browser instances include the improved genomic sequences, gene annotations, and the results of the bioinformatics analyses described in the manuscript.
PY  - 2016-06-03
T1  - Datasets for “Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution”
TI  - Datasets for “Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution”
UR  - https://data.library.wustl.edu/record/1/files/DASI_Faculty_WL.doc
UR  - https://data.library.wustl.edu/record/1/files/DereWGS.dump.xz
UR  - https://data.library.wustl.edu/record/1/files/DgriImproved.dump.xz
UR  - https://data.library.wustl.edu/record/1/files/Digital_Assets_Readme_WL.docx
UR  - https://data.library.wustl.edu/record/1/files/DmojImproved.dump.xz
UR  - https://data.library.wustl.edu/record/1/files/Elgin_ReadMe.pdf
UR  - https://data.library.wustl.edu/record/1/files/dm3.dump.xz
UR  - https://data.library.wustl.edu/record/1/files/four_genomes_improved_annotations.asn1.gz
UR  - https://data.library.wustl.edu/record/1/files/four_genomes_paper_author_list.xlsx
UR  - https://data.library.wustl.edu/record/1/files/gbdb_DereWGS.tgz
UR  - https://data.library.wustl.edu/record/1/files/gbdb_DgriImproved.tgz
UR  - https://data.library.wustl.edu/record/1/files/gbdb_DmojImproved.tgz
UR  - https://data.library.wustl.edu/record/1/files/gbdb_dm3.tgz
Y1  - 2016-06-03
ER  -